A USC-led research team has found that marine microbes with a special metabolism are ubiquitous and could play an important role in how Earth regulates climate.
The study finds bacteria containing rhodopsins, a sunshine-grabbing pigment, are more abundant than once thought. Unlike algae, they don’t pull carbon dioxide (CO2) out of the air. And they will likely become more abundant in warming oceans, signaling a shuffling of microbial communities at the base of the food chain where the nitty-gritty work of energy conversion occurs.
“Oceans are important for climate change because they play a key role in the carbon cycle. Understanding how that works, and the marine organisms involved, helps us refine our climate models to predict climate in the future,” said Laura Gómez-Consarnau, assistant professor (research) of biology at the USC Dornsife College of Letters, Arts and Sciences.
The study appears today in Science Advances. Gómez-Consarnau is the lead author among an international team of scientists from California, China, the United Kingdom and Spain.
The findings break from the traditional interpretation of marine ecology found in textbooks, which states that nearly all sunlight in the ocean is captured by chlorophyll in algae. Instead, rhodopsin-equipped bacteria function like hybrid cars, powered by organic matter when available—as most bacteria are—and by sunlight when nutrients are scarce.
Rhodopsins were discovered 20 years ago, and scientists at USC and elsewhere have been studying their prevalence and metabolism since. These microbes have light-sensitive protein systems in their cell membranes that trap sunlight, an adaptation analogous to how rods and cones in the human eye gather light.
In this study, researchers trolled a 3,000-mile-long swath of the eastern Atlantic Ocean and Mediterranean Sea in 2014. They sampled microorganisms in the water column down to 200 meters in an attempt to find how widespread rhodopsins are and in what conditions they are favored.
They found that rhodopsin photosystems were much more abundant than previously realized and concentrated in nutrient-poor waters. In such oligotrophic zones, they outperform algae at capturing light. While algae use sunlight and CO2 to produce organic material and oxygen, rhodopsin pigments use light to make adenosine triphosphate, the basic energy currency that drives many cellular processes.
“Rhodopsins appear to be more abundant in a nutrient-poor ocean, and in the future, the ocean will be more nutrient poor as temperatures change,” Gómez-Consarnau explained. “So, with fewer nutrients near the surface, algae will have limited photosynthesis, and the rhodopsin process will be more abundant. We may have a shift in the future, which means the ocean won’t be able to absorb as much carbon as it does today. So more CO2 gas may remain in the at